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1

Efficient Signal Inclusion With Genomic Applications

Jeng, X. Jessie, Zhang, Teng, Tzeng, Jung-Ying

Journal:

Journal of the American Statistical Association

Year:

2018

Language:

english

File:

PDF, 818 KB

english, 2018

2

Comparing the performance of two indices for spatial model selection: application to two mortality data

Chuhsing Kate Hsiao, Jung-Ying Tzeng, Chih-Hao Wang

Journal:

Statistics in Medicine

Year:

2000

Language:

english

File:

PDF, 164 KB

english, 2000

3

Evolutionary-based grouping of haplotypes in association analysis

Jung-Ying Tzeng

Journal:

Genetic Epidemiology

Year:

2005

Language:

english

File:

PDF, 150 KB

english, 2005

4

Evaluating haplotype effects in case-control studies via penalized-likelihood approaches: prospective or retrospective analysis?

Megan L. Koehler, Howard D. Bondell, Jung-Ying Tzeng

Journal:

Genetic Epidemiology

Year:

2010

Language:

english

File:

PDF, 179 KB

english, 2010

5

A two-stage design for multiple testing in large-scale association studies

Shu-Hui Wen, Jung-Ying Tzeng, Jau-Tsuen Kao, Chuhsing Kate Hsiao

Journal:

Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 412 KB

english, 2006

6

A Regression-based Association Test for Case-control Studies that Uses Inferred Ancestral Haplotype Similarity

Youfang Liu, Yi-Ju Li, Glen A. Satten, Andrew S. Allen, Jung-Ying Tzeng

Journal:

Annals of Human Genetics

Year:

2009

Language:

english

File:

PDF, 208 KB

english, 2009

7

Gene-Trait Similarity Regression for Multimarker-Based Association Analysis

Jung-Ying Tzeng, Daowen Zhang, Sheng-Mao Chang, Duncan C. Thomas, Marie Davidian

Journal:

Year:

2009

Language:

english

File:

PDF, 215 KB

english, 2009

8

A comprehensive approach to haplotype-specific analysis by penalized likelihood

Tzeng, Jung-Ying, Bondell, Howard D

Journal:

European Journal of Human Genetics

Year:

2009

Language:

english

File:

PDF, 326 KB

english, 2009

9

Studying Gene and Gene-Environment Effects of Uncommon and Common Variants on Continuous Traits: A Marker-Set Approach Using Gene-Trait Similarity Regression

Jung-Ying Tzeng, Daowen Zhang, Monnat Pongpanich, Chris Smith, Mark I. McCarthy, Michèle M. Sale, Bradford B. Worrall, Fang-Chi Hsu, Duncan C. Thomas, Patrick F. Sullivan

Journal:

The American Journal of Human Genetics

Year:

2011

Language:

english

File:

PDF, 423 KB

english, 2011

10

On the Identification of Disease Mutations by the Analysis of Haplotype Similarity and Goodness of Fit

Jung-Ying Tzeng, B. Devlin, Larry Wasserman, Kathryn Roeder

Journal:

The American Journal of Human Genetics

Year:

2003

Language:

english

File:

PDF, 670 KB

english, 2003

11

Regression-Based Association Analysis with Clustered Haplotypes through Use of Genotypes

Jung-Ying Tzeng, Chih-Hao Wang, Jau-Tsuen Kao, Chuhsing Kate Hsiao

Journal:

The American Journal of Human Genetics

Year:

2006

Language:

english

File:

PDF, 304 KB

english, 2006

12

Haplotype-Based Association Analysis via Variance-Components Score Test

Jung-Ying Tzeng, Daowen Zhang

Journal:

The American Journal of Human Genetics

Year:

2007

Language:

english

File:

PDF, 1.03 MB

english, 2007

13

Combining an Evolution-guided Clustering Algorithm and Haplotype-based LRT in Family Association Studies

Mei-Hsien Lee, Jung-Ying Tzeng, Su-Yun Huang, Chuhsing Kate Hsiao

Journal:

Year:

2011

Language:

english

File:

PDF, 668 KB

english, 2011

14

Outlier Detection and False Discovery Rates for Whole-Genome DNA Matching

Jung-Ying Tzeng, William Byerley, B. Devlin, Kathryn Roeder and Larry Wasserman

Journal:

Journal of the American Statistical Association

Year:

2003

Language:

english

File:

PDF, 2.08 MB

english, 2003

15

Likelihood-Based Inference on Haplotype Effects in Genetic Association Studies [with Comment]

D. Y. Lin, D. Zeng, Chiara Sabatti, Glen A. Satten, Andrew S. Allen, Michael P. Epstein, Nilanjan Chatterjee, Christine Spinka, Jinbo Chen, Raymond J. Carroll, Jung-Ying Tzeng, Kathryn Roeder, Hongzhe

Journal:

Journal of the American Statistical Association

Year:

2006

Language:

english

File:

PDF, 4.23 MB

english, 2006

16

Outlier Detection and False Discovery Rates for Whole-Genome DNA Matching

Tzeng, Jung-Ying, Byerley, William, Devlin, B, Roeder, Kathryn, Wasserman, Larry

Journal:

Journal of the American Statistical Association

Year:

2003

Language:

english

File:

PDF, 299 KB

english, 2003

17

Pathway-Guided Identification of Gene-Gene Interactions

Wang, Xin, Zhang, Daowen, Tzeng, Jung-Ying

Journal:

Annals of Human Genetics

Year:

2014

Language:

english

File:

PDF, 345 KB

english, 2014

18

Proper Use of Allele-Specific Expression Improves Statistical Power for cis -eQTL Mapping with RNA-Seq Data

Hu, Yi-Juan, Sun, Wei, Tzeng, Jung-Ying, Perou, Charles M.

Journal:

Journal of the American Statistical Association

Year:

2015

Language:

english

File:

PDF, 775 KB

english, 2015

19

Haplotype-Based Pharmacogenetic Analysis for Longitudinal Quantitative Traits in the Presence of Dropout

Tzeng∗, Jung-Ying, Lu∗, Wenbin, Farmen, Mark W., Liu, Youfang, Sullivan, Patrick F.

Journal:

Journal of Biopharmaceutical Statistics

Year:

2010

Language:

english

File:

PDF, 772 KB

english, 2010

20

Complete Effect-Profile Assessment in Association Studies With Multiple Genetic and Multiple Environmental Factors

Wang, Zhi, Maity, Arnab, Luo, Yiwen, Neely, Megan L., Tzeng, Jung-Ying

Journal:

Genetic Epidemiology

Year:

2015

Language:

english

File:

PDF, 776 KB

english, 2015

21

Detection of gene-gene interactions using multistage sparse and low-rank regression

Hung, Hung, Lin, Yu-Ting, Chen, Penweng, Wang, Chen-Chien, Huang, Su-Yun, Tzeng, Jung-Ying

Journal:

Year:

2015

Language:

english

File:

PDF, 521 KB

english, 2015

22

Comment

Tzeng, Jung-Ying, Roeder, Kathryn

Journal:

Journal of the American Statistical Association

Year:

2006

Language:

english

File:

PDF, 300 KB

english, 2006

23

Across-Platform Imputation of DNA Methylation Levels Incorporating Nonlocal Information Using Penalized Functional Regression

Zhang, Guosheng, Huang, Kuan-Chieh, Xu, Zheng, Tzeng, Jung-Ying, Conneely, Karen N., Guan, Weihua, Kang, Jian, Li, Yun

Journal:

Genetic Epidemiology

Year:

2016

Language:

english

File:

PDF, 616 KB

english, 2016

24

Testing and estimation in marker-set association study using semiparametric quantile regression kernel machine

Kong, Dehan, Maity, Arnab, Hsu, Fang-Chi, Tzeng, Jung-Ying

Journal:

Year:

2016

Language:

english

File:

PDF, 197 KB

english, 2016

25

A penalized likelihood approach for investigating gene-drug interactions in pharmacogenetic studies

Neely, Megan L., Bondell, Howard D., Tzeng, Jung-Ying

Journal:

Year:

2015

Language:

english

File:

PDF, 261 KB

english, 2015

26

A Fast Multiple-Kernel Method With Applications to Detect Gene-Environment Interaction

Marceau, Rachel, Lu, Wenbin, Holloway, Shannon, Sale, Michèle M., Worrall, Bradford B., Williams, Stephen R., Hsu, Fang-Chi, Tzeng, Jung-Ying

Journal:

Genetic Epidemiology

Year:

2015

Language:

english

File:

PDF, 1.23 MB

english, 2015

27

Gene-Trait Similarity Regression for Multimarker-Based Association Analysis

Jung-Ying Tzeng, Daowen Zhang, Sheng-Mao Chang, Duncan C. Thomas and Marie Davidian

Journal:

Year:

2009

Language:

english

File:

PDF, 2.10 MB

english, 2009

28

Gene-level pharmacogenetic analysis on survival outcomes using gene-trait similarity regression

Tzeng, Jung-Ying, Lu, Wenbin, Hsu, Fang-Chi

Journal:

The Annals of Applied Statistics

Year:

2014

Language:

english

File:

PDF, 471 KB

english, 2014

29

On the substructure controls in rare variant analysis: Principal components or variance components?

Luo, Yiwen, Maity, Arnab, Wu, Michael C., Smith, Chris, Duan, Qing, Li, Yun, Tzeng, Jung-Ying

Journal:

Genetic Epidemiology

Year:

2017

Language:

english

File:

PDF, 1.06 MB

english, 2017

30

Inference on phenotype-specific effects of genes using multivariate kernel machine regression

Maity, Arnab, Zhao, Jing, Sullivan, Patrick F., Tzeng, Jung-Ying

Journal:

Genetic Epidemiology

Year:

2018

Language:

english

File:

PDF, 1.70 MB

english, 2018

31

Cadmium exposure increases the risk of juvenile obesity: a human and zebrafish comparative study

Green, Adrian J., Hoyo, Cathrine, Mattingly, Carolyn J., Luo, Yiwen, Tzeng, Jung-Ying, Murphy, Susan K., Buchwalter, David B., Planchart, Antonio

Journal:

International Journal of Obesity

Year:

2018

Language:

english

File:

PDF, 812 KB

english, 2018

32

Analysis of Gene-Gene Interactions Using Gene-Trait Similarity Regression

Wang, Xin, Epstein, Michael P., Tzeng, Jung-Ying

Journal:

Year:

2014

Language:

english

File:

PDF, 1.08 MB

english, 2014

33

Re-examining Dis/Similarity-Based Tests for Rare-Variant Association with Case-Control Samples

Wang, Charlotte, Tzeng, Jung-Ying, Wu, Pei-Zhen, Preisig, Martin, Hsiao, Chuhsing Kate

Journal:

Year:

2018

Language:

english

File:

PDF, 687 KB

english, 2018

34

Rejoinder to “A note on testing and estimation in marker-set association study using semiparametric quantile regression kernel machine”

Kong, Dehan, Maity, Arnab, Hsu, Fang-Chi, Tzeng, Jung-Ying

Journal:

Year:

2017

Language:

english

File:

PDF, 70 KB

english, 2017

35

Rare Variants Association Analysis in Large-Scale Sequencing Studies at the Single Locus Level

Jeng, Xinge Jessie, Daye, Zhongyin John, Lu, Wenbin, Tzeng, Jung-Ying, Radivojac, Predrag

Journal:

PLoS Computational Biology

Year:

2016

Language:

english

File:

PDF, 1.02 MB

english, 2016

36

A New Method for Detecting Associations with Rare Copy-Number Variants

Tzeng, Jung-Ying, Magnusson, Patrik K. E., Sullivan, Patrick F., Szatkiewicz, Jin P., Hakonarson, Hakon

Journal:

Year:

2015

Language:

english

File:

PDF, 2.55 MB

english, 2015

37

On the Aggregation of Multimarker Information for Marker-Set and Sequencing Data Analysis: Genotype Collapsing vs. Similarity Collapsing

Pongpanich, Monnat, Neely, Megan L., Tzeng, Jung-Ying

Journal:

Frontiers in Genetics

Year:

2012

Language:

english

File:

PDF, 2.17 MB

english, 2012

38

The association between neuraxial anesthesia and the development of childhood asthma â a secondary analysis of the Newborn Epigenetics Study Cohort

Huang, Yueyang, Tzeng, Jung-Ying, Maguire, Rachel, Hoyo, Cathrine, Allen, Terrence

Journal:

Current Medical Research and Opinion

Year:

2020

Language:

english

File:

PDF, 1.03 MB

english, 2020

39

Effective SNP ranking improves the performance of eQTL mapping

Jeng, X. Jessie, Rhyne, Jacob, Zhang, Teng, Tzeng, Jung-Ying

Journal:

Genetic Epidemiology

Year:

2020

File:

PDF, 916 KB

2020